Co-expression analysis

Gene ID	Ptp.6077.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g21920: unknown protein (HF=1e+0)
Module size	7 genes
NF	0.60
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	Ptp.6077.1.S1_s_at	BI122891	hypothetical protein	-	1e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	Ptp.6340.1.S1_at	BU888207	hypothetical protein	-	2e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.94	Ptp.7181.1.S1_at	DN488307	hypothetical protein	-	2e-6	At1g49570	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.95	PtpAffx.204632.1.S1_at	pmrna9105	hypothetical protein	-	1e-1	At5g50200	WR3 (WOUND-RESPONSIVE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.95	PtpAffx.9749.1.A1_at	DN491489	hypothetical protein	-	4e+0	At5g04790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.152294.1.S1_at	CX653673	-	-	5e-1	At3g59440	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	Ptp.3032.1.S1_s_at	DN494443	hypothetical protein	-	6e-3	At5g07850	transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	98.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3	95.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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