CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.607.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g54680: ILR3 (iaa-leucine resistant3) (HF=1e-17)

Module size 6 genes

NF 0.39

%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.94 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.44 71.9 0.94 Ptp.1730.1.A1_at CK093317 - - 5e+0 At5g62330 - O.I. H.G. S.X.
0.43 69.7 0.94 PtpAffx.41755.1.S1_at DN499227 hypothetical protein - 3e-2 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) O.I. H.G. S.X.
0.29 50.5 0.94 PtpAffx.16390.1.S1_at DN496341 - - 6e+0 At1g29620 unknown protein O.I. H.G. S.X.
0.25 43.6 0.94 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) O.I. H.G. S.X.
0.24 41.8 0.94 Ptp.1919.1.A1_at CK092679 - - 4e-2 At5g40180 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	94.9	0.94	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.
0.44	71.9	0.94	Ptp.1730.1.A1_at	CK093317	-	-	5e+0	At5g62330	-	O.I.	H.G.	S.X.
0.43	69.7	0.94	PtpAffx.41755.1.S1_at	DN499227	hypothetical protein	-	3e-2	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.16390.1.S1_at	DN496341	-	-	6e+0	At1g29620	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.94	Ptp.788.1.S1_at	CK089255	hypothetical protein	-	2e-38	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	O.I.	H.G.	S.X.
0.24	41.8	0.94	Ptp.1919.1.A1_at	CK092679	-	-	4e-2	At5g40180	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.59	84.9	0.91	Ptp.5151.2.S1_at	DN490233	hypothetical protein	-	3e-1	At3g51325	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.53	80.5	0.91	Ptp.3543.1.S1_at	DN492978	hypothetical protein	-	1e-14	At1g24120	ARL1 (ARG1-LIKE 1)	O.I.	H.G.	S.X.
0.50	78.6	0.89	PtpAffx.67683.1.S1_at	DN487899	-	-	6e+0	At1g73390	-	O.I.	H.G.	S.X.
0.46	73.7	0.89	Ptp.1735.2.A1_at	CK093398	hypothetical protein	-	2e+0	At1g70660	MMZ2 (MMS ZWEI HOMOLOGE 2)	O.I.	H.G.	S.X.
0.46	73.7	0.92	PtpAffx.33061.1.A1_at	CK087387	-	-	1e+0	Atcg01080	-	O.I.	H.G.	S.X.
0.44	71.9	0.92	PtpAffx.6975.1.S1_at	CN519555	hypothetical protein	-	5e-1	At3g59680	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.93	Ptp.6498.2.S1_at	AI162148	hypothetical protein	-	1e+0	At5g36280	-	O.I.	H.G.	S.X.
0.42	68.6	0.91	PtpAffx.129194.1.S1_at	CK106816	-	-	1e+1	At5g48200	unknown protein	O.I.	H.G.	S.X.
0.42	68.6	0.92	PtpAffx.878.4.S1_at	BU813426	hypothetical protein	-	4e-18	At1g21660	heat shock protein binding	O.I.	H.G.	S.X.
0.40	67.0	0.89	PtpAffx.2631.1.S1_at	BU873170	hypothetical protein	-	7e-1	At5g46500	-	O.I.	H.G.	S.X.
0.40	67.0	0.89	PtpAffx.61331.1.A1_at	DN484453	-	-	8e-7	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	O.I.	H.G.	S.X.
0.40	67.0	0.90	Ptp.3237.1.S1_at	DN495578	hypothetical protein	-	2e+0	At2g35736	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.88	PtpAffx.28903.1.S1_at	DN496627	hypothetical protein	-	2e-1	At5g20110	dynein light chain, putative	O.I.	H.G.	S.X.
0.36	61.6	0.89	Ptp.1933.1.A1_at	CK093171	-	-	5e+0	At2g47960	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.91	PtpAffx.162497.1.S1_at	CF232739	hypothetical protein	-	1e-2	At1g51040	phosphatidylinositol 4-kinase, putative	O.I.	H.G.	S.X.
0.35	59.7	0.88	PtpAffx.65218.1.A1_at	CK090369	-	-	1e+0	At4g26020	-	O.I.	H.G.	S.X.
0.33	57.5	0.90	Ptp.1116.1.A1_at	CK090248	aquaporin, MIP family, SIP subfamily	-	9e-1	At3g04090	SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.
0.33	57.5	0.92	Ptp.1731.1.A1_at	CK093318	hypothetical protein	-	8e+0	At5g22190	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.202952.1.S1_at	pmrna5840	hypothetical protein	-	2e-12	At1g79840	GL2 (GLABRA 2)	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.48049.1.S1_at	DN489796	hypothetical protein	-	5e+0	At5g24410	glucosamine/galactosamine-6-phosphate isomerase-related	O.I.	H.G.	S.X.
0.27	47.1	0.89	PtpAffx.144931.1.S1_at	CK110237	-	-	2e+0	At5g07840	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.27	47.1	0.92	PtpAffx.59002.1.S1_s_at	CV233920	hypothetical protein	-	6e-53	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.
0.26	45.2	0.86	PtpAffx.42102.1.S1_at	DN485776	hypothetical protein	-	6e-1	At3g49860	ATARLA1B (ADP-ribosylation factor-like A1B)	O.I.	H.G.	S.X.
0.25	43.6	0.91	PtpAffx.13823.1.S1_a_at	CK095337	-	-	3e-1	At2g12190	cytochrome P450, putative	O.I.	H.G.	S.X.
0.25	43.6	0.93	Ptp.1118.1.A1_at	CK090264	hypothetical protein	-	9e-1	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.2 99.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
11.2	99.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ptp.607.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g54680: ILR3 (iaa-leucine resistant3) (HF=1e-17)
Module size	6 genes
NF	0.39
%ile	66.7

Co-expression analysis

Gene ID Ptp.607.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g54680: ILR3 (iaa-leucine resistant3) (HF=1e-17) Module size 6 genes NF 0.39 %ile 66.7

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.607.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g54680: ILR3 (iaa-leucine resistant3) (HF=1e-17)

Module size 6 genes

NF 0.39

%ile 66.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays