CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.607.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g54680: ILR3 (iaa-leucine resistant3) (HF=1e-17)

Module size 6 genes

NF 0.39

%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.94 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.44 71.9 0.94 Ptp.1730.1.A1_at CK093317 - - 5e+0 At5g62330 - O.I. H.G. S.X.
0.43 69.7 0.94 PtpAffx.41755.1.S1_at DN499227 hypothetical protein - 3e-2 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) O.I. H.G. S.X.
0.29 50.5 0.94 PtpAffx.16390.1.S1_at DN496341 - - 6e+0 At1g29620 unknown protein O.I. H.G. S.X.
0.25 43.6 0.94 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) O.I. H.G. S.X.
0.24 41.8 0.94 Ptp.1919.1.A1_at CK092679 - - 4e-2 At5g40180 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.2 99.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1612503_at, orthologous to the query gene, Ptp.607.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 95.4 1612503_at At5g54680 hypothetical protein LOC100245935 /// hypothetical protein LOC100256267 - 1e-13 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.75 91.3 1613841_s_at At5g54680 hypothetical protein LOC100253839 - 1e-20 At1g52870 peroxisomal membrane protein-related O.I. H.G. S.X.
0.45 64.6 1613715_at At5g54680 hypothetical protein LOC100257071 - 9e-21 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.44 64.1 1618001_at At5g54680 hypothetical protein LOC100252456 - 1e-87 At5g64940 ATATH13 O.I. H.G. S.X.
0.38 53.6 1610680_at At5g54680 - - 4e-51 At1g67700 unknown protein O.I. H.G. S.X.
0.31 41.3 1611124_at At5g54680 similar to Probable pyridoxal biosynthesis protein PDX1 - 5e-60 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) O.I. H.G. S.X.
0.21 24.0 1621979_at At5g54680 hypothetical protein LOC100254010 - 7e-12 At1g62850 - O.I. H.G. S.X.
0.18 19.4 1617345_s_at At5g54680 hypothetical protein LOC100247984 - 3e-21 At1g64720 CP5 O.I. H.G. S.X.
0.18 19.4 1620267_at At5g54680 hypothetical protein LOC100264696 - 7e-9 At5g20140 SOUL heme-binding family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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