Co-expression analysis

Gene ID	Ptp.607.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g54680: ILR3 (iaa-leucine resistant3) (HF=1e-17)
Module size	6 genes
NF	0.39
%ile	66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.94	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	Ptp.1730.1.A1_at	CK093317	-	-	5e+0	At5g62330	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.41755.1.S1_at	DN499227	hypothetical protein	-	3e-2	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.16390.1.S1_at	DN496341	-	-	6e+0	At1g29620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	Ptp.788.1.S1_at	CK089255	hypothetical protein	-	2e-38	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.94	Ptp.1919.1.A1_at	CK092679	-	-	4e-2	At5g40180	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.26572.1.A1_at, orthologous to the query gene, Ptp.607.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	Ta.26572.1.A1_at	At5g54680	-	-	9e-20	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please select
0.55	76.8	TaAffx.55653.1.S1_at	At5g54680	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.4857.1.S1_at	At5g54680	-	-	4e+0	At1g77682	-	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.3664.1.S1_at	At5g54680	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.112158.1.S1_at	At5g54680	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.118620.1.S1_at	At5g54680	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.110167.1.S1_at	At5g54680	-	-	4e+0	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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