CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.607.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g54680: ILR3 (iaa-leucine resistant3) (HF=1e-17)

Module size 6 genes

NF 0.39

%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.94 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.44 71.9 0.94 Ptp.1730.1.A1_at CK093317 - - 5e+0 At5g62330 - O.I. H.G. S.X.
0.43 69.7 0.94 PtpAffx.41755.1.S1_at DN499227 hypothetical protein - 3e-2 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) O.I. H.G. S.X.
0.29 50.5 0.94 PtpAffx.16390.1.S1_at DN496341 - - 6e+0 At1g29620 unknown protein O.I. H.G. S.X.
0.25 43.6 0.94 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) O.I. H.G. S.X.
0.24 41.8 0.94 Ptp.1919.1.A1_at CK092679 - - 4e-2 At5g40180 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.2 99.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os07g0543000, orthologous to the query gene, Ptp.607.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os07g0543000 At5g54680 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-19 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.46 60.9 Os03g0681400 At5g54680 - Ubiquitin-conjugating enzymes domain containingprotein 1e-13 At5g42990 UBC18 (ubiquitin-conjugating enzyme 18) O.I. H.G. S.X.
0.36 44.0 Os02g0805600 At5g54680 - Quinone oxidoreductase 2e-1 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.24 22.4 Os02g0826400 At5g54680 - Conserved hypothetical protein 7e-2 At4g24026 unknown protein O.I. H.G. S.X.
0.18 13.7 Os01g0668000 At5g54680 - Nuclear movement protein domain containing protein 4e-11 At5g58740 nuclear movement family protein O.I. H.G. S.X.
0.18 13.7 Os04g0464500 At5g54680 - UBX domain containing protein 7e-4 At4g22150 PUX3 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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