CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.607.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g54680: ILR3 (iaa-leucine resistant3) (HF=1e-17)

Module size 6 genes

NF 0.39

%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.94 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.44 71.9 0.94 Ptp.1730.1.A1_at CK093317 - - 5e+0 At5g62330 - O.I. H.G. S.X.
0.43 69.7 0.94 PtpAffx.41755.1.S1_at DN499227 hypothetical protein - 3e-2 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) O.I. H.G. S.X.
0.29 50.5 0.94 PtpAffx.16390.1.S1_at DN496341 - - 6e+0 At1g29620 unknown protein O.I. H.G. S.X.
0.25 43.6 0.94 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) O.I. H.G. S.X.
0.24 41.8 0.94 Ptp.1919.1.A1_at CK092679 - - 4e-2 At5g40180 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.2 99.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g54680, orthologous to the query gene, Ptp.607.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At5g54680 835557 ILR3 (iaa-leucine resistant3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBA O.I. H.G. S.X.
0.60 75.7 At5g42000 834205 ORMDL family protein F:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPO O.I. H.G. S.X.
0.57 73.8 At5g53310 835412 myosin heavy chain-related F:motor activity;P:biological_process unknown;C:plasma membrane;MOFP O.I. H.G. S.X.
0.50 65.3 At3g59090 825078 - F:unknown;P:unknown;C:unknown;POF O.I. H.G. S.X.
0.29 30.3 At4g15470 827218 - F:unknown;P:unknown;C:unknown;BOMPFV O.I. H.G. S.X.
0.23 19.3 At1g32400 840133 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses. O.I. H.G. S.X.
0.21 15.8 At3g28710 822502 H+-transporting two-sector ATPase, putative F:hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, plant-type vacuole;MFOPAB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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