Co-expression analysis

Gene ID Ptp.5961.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=6e-63)
Module size 21 genes
NF 0.40
%ile 68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7493.80.93Ptp.5961.1.S1_atCV280435hypothetical protein-6e-63At3g23660transport protein, putativeO.I.H.G.S.X.
0.5582.20.94PtpAffx.3505.2.S1_a_atCV233753hypothetical protein-4e-27At3g52190PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)O.I.H.G.S.X.
0.5380.50.96PtpAffx.7182.2.S1_atCV261407--6e+0At2g30930unknown proteinO.I.H.G.S.X.
0.5279.40.95PtpAffx.207111.1.S1_x_atpmrna14095hypothetical protein-2e-34At5g65000nucleotide-sugar transporter family proteinO.I.H.G.S.X.
0.5178.90.94PtpAffx.7210.2.A1_atBP930061hypothetical protein-1e-9At2g46260BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.113579.1.S1_s_atCA930280hypothetical protein-4e-31At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.4774.60.96PtpAffx.13438.1.S1_s_atAI167052hypothetical protein-2e-96At3g28715H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.4471.90.95PtpAffx.100134.1.A1_s_atCV230238--1e+1At1g01250AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4067.00.95PtpAffx.25116.1.A1_atCV228813hypothetical protein-2e-8At3g54130josephin family proteinO.I.H.G.S.X.
0.4067.00.96PtpAffx.43623.2.A1_a_atCV227115hypothetical protein-7e-5At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.3964.60.96Ptp.6307.1.S1_atCV240855hypothetical protein-9e-6At5g16510reversibly glycosylated polypeptide, putativeO.I.H.G.S.X.
0.3863.70.95PtpAffx.15375.1.S1_atCV232670--5e-20At3g53000AtPP2-A15 (Phloem protein 2-A15)O.I.H.G.S.X.
0.3762.30.96Ptp.312.1.S1_a_atBP935119hypothetical protein-1e-4At5g05750DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3458.30.95PtpAffx.202120.1.S1_x_atpmrna4237hypothetical protein-3e-83At2g35170MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.
0.3458.30.95PtpAffx.79437.1.S1_s_atCX168134hypothetical protein-5e-43At2g30980ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)O.I.H.G.S.X.
0.3357.50.95PtpAffx.13792.1.S1_atCV267483hypothetical protein-4e-20At3g49390CID10O.I.H.G.S.X.
0.3153.70.94PtpAffx.161118.1.S1_s_atCK319174hypothetical protein-6e-18At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.2950.50.95PtpAffx.23209.1.S1_atBP933116hypothetical protein-2e-35At4g22330ATCES1O.I.H.G.S.X.
0.2850.50.96PtpAffx.12284.1.A1_s_atCV236490hypothetical protein-6e-81At3g46060ATRAB8AO.I.H.G.S.X.
0.2645.20.96Ptp.5593.1.S1_atDN495608hypothetical protein-7e-15At4g26240unknown proteinO.I.H.G.S.X.
0.2034.60.95PtpAffx.4529.1.S1_atCK091600hypothetical protein-4e-138At5g03290isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.684.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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