Co-expression analysis

Gene ID Ptp.5932.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g08510: ATPLC2 (PHOSPHOLIPASE C 2) (HF=2e-19)
Module size 8 genes
NF 0.40
%ile 68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7594.10.96Ptp.5932.1.S1_s_atCA928506hypothetical protein-2e-19At3g08510ATPLC2 (PHOSPHOLIPASE C 2)O.I.H.G.S.X.
0.5683.90.97PtpAffx.212970.1.S1_s_atpmrna25375NPR1/NIM1-like regulatory protein /// hypothetical protein /// hypothetical protein-2e-5At4g19660NPR4 (NPR1-like protein 4)O.I.H.G.S.X.
0.5380.50.97PtpAffx.134048.1.S1_atCX656559--3e-1At1g04760ATVAMP726O.I.H.G.S.X.
0.4875.40.97Ptp.4739.1.S1_s_atCV268981hypothetical protein-8e-40At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.3255.20.96PtpAffx.212393.1.S1_s_atpmrna24283hypothetical protein-3e-49At1g34320unknown proteinO.I.H.G.S.X.
0.2950.50.97Ptp.1361.3.S1_s_atBU875386hypothetical protein-2e-1At4g14660NRPE7O.I.H.G.S.X.
0.2747.10.97Ptp.7537.1.S1_atCV236898hypothetical protein-6e-57At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.
0.2238.30.97PtpAffx.10545.2.S1_a_atBU875296hypothetical protein-2e-10At5g38630ACYB-1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.892.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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