Co-expression analysis

Gene ID	Ptp.59.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g41910: RNA polymerase II mediator complex protein-related (HF=2e-15)
Module size	6 genes
NF	0.49
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.94	Ptp.59.1.S1_at	CA932099	hypothetical protein	-	2e-15	At5g41910	RNA polymerase II mediator complex protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.156393.1.S1_at	BU888403	-	-	2e+0	At3g13630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.105178.1.S1_at	CV235583	-	-	2e-12	At3g01790	ribosomal protein L13 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	Ptp.400.2.A1_at	CV264670	-	-	5e-7	At3g06110	MKP2 (MAPK PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.5925.1.S1_at	DN494623	hypothetical protein	-	1e-40	At4g30220	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	PtpAffx.1472.2.A1_a_at	CK096708	hypothetical protein	-	2e+0	At3g25770	AOC2 (ALLENE OXIDE CYCLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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