Co-expression analysis

Gene ID	Ptp.5762.1.S1_at
Gene name	ebs-bah-phd domain-containing protein
Homology with Arabidopsis	Similar to At4g22140: DNA binding / protein binding / zinc ion binding (HF=2e-46)
Module size	11 genes
NF	0.55
%ile	86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.97	Ptp.5762.1.S1_at	AJ777748	ebs-bah-phd domain-containing protein	-	2e-46	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.97	PtpAffx.3203.6.S1_a_at	CV131510	hypothetical protein	-	3e-11	At4g24940	SAE1A (SUMO-ACTIVATING ENZYME 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	Ptp.5617.2.S1_a_at	CV281313	-	-	3e-19	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	Ptp.1361.3.S1_s_at	BU875386	hypothetical protein	-	2e-1	At4g14660	NRPE7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.98	PtpAffx.134857.2.S1_at	CN523812	hypothetical protein	-	2e-24	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.97	PtpAffx.123989.1.S1_at	DN495946	-	-	8e-15	At5g67630	DNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.97	PtpAffx.39134.2.S1_s_at	BU818720	hypothetical protein	-	8e-23	At5g10270	CDKC	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.98	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.98	PtpAffx.156707.1.S1_s_at	BU873655	hypothetical protein	-	4e-4	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.97	PtpAffx.136933.1.S1_s_at	AI166650	hypothetical protein	-	3e-5	At1g64350	SEH1H	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	90.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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