Co-expression analysis

Gene ID	Ptp.5740.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g49710: unknown protein (HF=4e-7)
Module size	23 genes
NF	0.27
%ile	48.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	94.3	0.95	Ptp.5740.1.S1_a_at	CV241383	hypothetical protein	-	4e-7	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	PtpAffx.1099.1.A1_s_at	CV279908	hypothetical protein	-	2e-47	At2g19830	SNF7.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	Ptp.1196.1.A1_at	CV228560	chromatin remodeling complex subunit	-	2e-12	At2g46020	transcription regulatory protein SNF2, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.30748.1.A1_a_at	CV256204	hypothetical protein	-	2e-31	At5g55000	FIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	Ptp.3489.1.S1_s_at	CK092358	hypothetical protein	-	3e-46	At5g57330	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.3784.2.A1_at	CV228383	hypothetical protein	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.52080.1.S1_s_at	CV247275	hypothetical protein	-	5e-22	At1g27310	NTF2A (NUCLEAR TRANSPORT FACTOR 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.97	PtpAffx.11198.1.A1_at	CV275391	hypothetical protein	-	1e+0	At2g28355	LCR5 (Low-molecular-weight cysteine-rich 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.15785.1.S1_at	CV234340	hypothetical protein	-	1e-7	At2g19350	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	Ptp.2585.1.S1_at	CK318462	hypothetical protein	-	4e-15	At5g05100	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.97	Ptp.7892.1.A1_at	BP933525	hypothetical protein	-	2e-18	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	Ptp.1267.1.S1_x_at	CK111152	hypothetical protein	-	1e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	PtpAffx.202997.1.S1_at	pmrna5928	hypothetical protein	-	6e-101	At3g14270	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.96	Ptp.736.1.A1_s_at	CV249105	hypothetical protein	-	5e-10	At3g62770	AtATG18a	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.96	PtpAffx.56332.1.A1_at	CV269092	hypothetical protein	-	9e-16	At4g10080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	PtpAffx.25004.2.A1_at	CV240968	hypothetical protein	-	1e-38	At3g11200	AL2 (ALFIN-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	PtpAffx.28528.1.S1_a_at	CV242239	hypothetical protein	-	8e-49	At5g58740	nuclear movement family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.97	PtpAffx.59939.1.S1_at	BP931653	hypothetical protein	-	2e-22	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.97	Ptp.5404.1.S1_s_at	CV247987	hypothetical protein	-	2e-24	At4g05000	VPS28-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.97	PtpAffx.34991.1.A1_at	CV261322	hypothetical protein	-	6e-50	At4g26610	D6PKL1 (D6 PROTEIN KINASE LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.96	PtpAffx.132995.1.S1_at	CV278938	hypothetical protein	-	4e-71	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.96	PtpAffx.208901.1.S1_at	pmrna17657	hypothetical protein	-	6e-1	At5g39370	S-locus glycoprotein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.96	PtpAffx.40878.1.S1_a_at	CK087593	hypothetical protein	-	1e-10	At4g30996	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.5	83.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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