Co-expression analysis

Gene ID	Ptp.5722.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g64510: ribosomal protein S6 family protein (HF=2e-15)
Module size	7 genes
NF	0.68
%ile	95.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.98	Ptp.5722.1.S1_at	CV226697	hypothetical protein	-	2e-15	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.98	Ptp.5695.1.S1_a_at	CV237546	hypothetical protein	-	7e-21	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.97	Ptp.4956.1.A1_x_at	CV240469	hypothetical protein	-	7e-12	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.97	PtpAffx.160484.1.A1_s_at	CV231727	hypothetical protein	-	3e-13	At5g11450	oxygen-evolving complex-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	Ptp.2324.1.A1_s_at	CV264004	hypothetical protein	-	5e-19	At5g66530	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	PtpAffx.53128.1.S1_at	CV238625	-	-	7e-25	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.97	PtpAffx.9317.1.S1_at	CV241750	hypothetical protein	-	1e+0	At4g14385	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage