Co-expression analysis

Gene ID	Ptp.5713.2.S1_a_at
Gene name	high affinity nitrate transporter
Homology with Arabidopsis	Similar to At5g60770: ATNRT2.4 (HF=7e-6)
Module size	8 genes
NF	0.62
%ile	91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.92	Ptp.5713.2.S1_a_at	AJ557585.1	high affinity nitrate transporter	-	7e-6	At5g60770	ATNRT2.4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.94	PtpAffx.208712.1.S1_at	pmrna17276	high affinity inorganic phosphate transporter	-	2e-11	At5g43350	PHT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.95	Ptp.7170.1.S1_at	DN497999	hypothetical protein	-	1e+0	At1g69760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	Ptp.7170.1.S1_s_at	DN497999	hypothetical protein	-	1e+0	At1g69760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	PtpAffx.205052.1.S1_at	pmrna10006	hypothetical protein	-	3e-8	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.209991.1.S1_at	pmrna19711	hypothetical protein	-	8e-6	At1g54890	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.1044.1.S1_at	CF235854	hypothetical protein	-	3e-33	At4g05390	ATRFNR1 (ROOT FNR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	Ptp.163.1.S1_at	CK089074	caffeic acid 3-O-methyltransferase	-	2e-15	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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