CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.5712.1.S1_at

Gene name ammonium transporter
Homology with Arabidopsis Similar to At1g64780: ATAMT1 (HF=3e-28)

Module size 15 genes

NF 0.34

%ile 59.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 97.7 0.88 Ptp.5712.1.S1_at CK113355 ammonium transporter - 3e-28 At1g64780 ATAMT1 O.I. H.G. S.X.
0.38 63.7 0.90 Ptp.7641.1.S1_at DN497831 hypothetical protein - 2e-1 At1g28630 unknown protein O.I. H.G. S.X.
0.38 63.7 0.93 Ptp.1044.1.S1_at CF235854 hypothetical protein - 3e-33 At4g05390 ATRFNR1 (ROOT FNR 1) O.I. H.G. S.X.
0.36 61.6 0.94 Ptp.2149.1.S1_at CK089576 hypothetical protein - 2e-3 At2g43150 proline-rich extensin-like family protein O.I. H.G. S.X.
0.35 59.7 0.95 Ptp.163.1.S1_at CK089074 caffeic acid 3-O-methyltransferase - 2e-15 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.32 55.2 0.97 PtpAffx.47744.2.S1_at CK093950 hypothetical protein - 3e-1 At4g32900 aminoacyl-tRNA hydrolase O.I. H.G. S.X.
0.31 53.7 0.96 Ptp.3169.2.S1_a_at CK104417 hypothetical protein - 9e-2 At1g14870 - O.I. H.G. S.X.
0.31 53.7 0.96 Ptp.7093.1.A1_at DN488225 hypothetical protein - 2e+0 At2g05530 glycine-rich protein O.I. H.G. S.X.
0.30 52.0 0.96 Ptp.5989.1.S1_at BU814762 hypothetical protein - 2e-21 At1g67600 - O.I. H.G. S.X.
0.30 52.0 0.97 Ptp.3482.1.S1_at BU883985 hypothetical protein - 2e+0 At5g20885 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.27 47.1 0.95 Ptp.3975.1.S1_at DN498805 - - 3e+0 At5g05470 EIF2 ALPHA O.I. H.G. S.X.
0.26 45.2 0.93 PtpAffx.90122.1.S1_at CK092046 - - 4e-2 At1g68620 hydrolase O.I. H.G. S.X.
0.26 45.2 0.96 Ptp.3720.1.S1_at CX657369 hypothetical protein - 1e-1 At1g55450 embryo-abundant protein-related O.I. H.G. S.X.
0.22 38.3 0.93 PtpAffx.5232.1.A1_at CV256388 hypothetical protein - 3e-1 At3g22231 PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1) O.I. H.G. S.X.
0.16 26.9 0.93 Ptp.2896.1.A1_at DN491532 hypothetical protein - 3e+0 At5g56452 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 92.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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