Co-expression analysis

Gene ID Ptp.5712.1.S1_at
Gene name ammonium transporter
Homology with ArabidopsisSimilar to At1g64780: ATAMT1 (HF=3e-28)
Module size 15 genes
NF 0.34
%ile 59.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8897.70.88Ptp.5712.1.S1_atCK113355ammonium transporter-3e-28At1g64780ATAMT1O.I.H.G.S.X.
0.3863.70.90Ptp.7641.1.S1_atDN497831hypothetical protein-2e-1At1g28630unknown proteinO.I.H.G.S.X.
0.3863.70.93Ptp.1044.1.S1_atCF235854hypothetical protein-3e-33At4g05390ATRFNR1 (ROOT FNR 1)O.I.H.G.S.X.
0.3661.60.94Ptp.2149.1.S1_atCK089576hypothetical protein-2e-3At2g43150proline-rich extensin-like family proteinO.I.H.G.S.X.
0.3559.70.95Ptp.163.1.S1_atCK089074caffeic acid 3-O-methyltransferase-2e-15At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.3255.20.97PtpAffx.47744.2.S1_atCK093950hypothetical protein-3e-1At4g32900aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.3153.70.96Ptp.3169.2.S1_a_atCK104417hypothetical protein-9e-2At1g14870-O.I.H.G.S.X.
0.3153.70.96Ptp.7093.1.A1_atDN488225hypothetical protein-2e+0At2g05530glycine-rich proteinO.I.H.G.S.X.
0.3052.00.96Ptp.5989.1.S1_atBU814762hypothetical protein-2e-21At1g67600-O.I.H.G.S.X.
0.3052.00.97Ptp.3482.1.S1_atBU883985hypothetical protein-2e+0At5g20885zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2747.10.95Ptp.3975.1.S1_atDN498805--3e+0At5g05470EIF2 ALPHAO.I.H.G.S.X.
0.2645.20.93PtpAffx.90122.1.S1_atCK092046--4e-2At1g68620hydrolaseO.I.H.G.S.X.
0.2645.20.96Ptp.3720.1.S1_atCX657369hypothetical protein-1e-1At1g55450embryo-abundant protein-relatedO.I.H.G.S.X.
0.2238.30.93PtpAffx.5232.1.A1_atCV256388hypothetical protein-3e-1At3g22231PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1)O.I.H.G.S.X.
0.1626.90.93Ptp.2896.1.A1_atDN491532hypothetical protein-3e+0At5g56452-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.992.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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