Co-expression analysis

Gene ID Ptp.5638.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g76310: CYCB2 (HF=6e-14)
Module size 6 genes
NF 0.67
%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95Ptp.5638.1.S1_atDN489006hypothetical protein-6e-14At1g76310CYCB2O.I.H.G.S.X.
0.6187.00.95PtpAffx.20278.2.A1_s_atCV244932hypothetical protein-3e-20At4g28950ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)O.I.H.G.S.X.
0.5784.20.95PtpAffx.2045.1.S1_atCK093245hypothetical protein-5e-20At1g08560SYP111 (SYNTAXIN OF PLANTS 111)O.I.H.G.S.X.
0.5582.20.95Ptp.759.1.S1_atCV259673tubulin alpha-7 chain-1e-82At4g14960TUA6O.I.H.G.S.X.
0.5582.20.95PtpAffx.200879.1.S1_atpmrna1723hypothetical protein-2e-6At2g26760CYCB1O.I.H.G.S.X.
0.4471.90.95PtpAffx.129586.1.S1_atCK088399hypothetical protein-6e-11At4g35620CYCB2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.197.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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