Co-expression analysis

Gene ID	Ptp.5621.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g48930: EMB1080 (embryo defective 1080) (HF=2e-89)
Module size	6 genes
NF	0.60
%ile	90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.98	Ptp.5621.1.S1_s_at	CV231534	hypothetical protein	-	2e-89	At3g48930	EMB1080 (embryo defective 1080)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.98	Ptp.1464.2.S1_x_at	CV281077	-	-	3e-40	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.98	Ptp.1431.1.S1_at	CX654507	hypothetical protein	-	3e-73	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.98	Ptp.1464.2.S1_at	CV281077	-	-	3e-40	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	Ptp.6777.2.S1_s_at	CX654265	hypothetical protein	-	3e-15	At5g28060	40S ribosomal protein S24 (RPS24B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.98	Ptp.1986.1.S1_a_at	CV245876	hypothetical protein	-	1e-41	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage