CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.5593.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g26240: unknown protein (HF=7e-15)

Module size 6 genes

NF 0.53

%ile 83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.35 59.7 0.96 Ptp.5593.1.S1_at DN495608 hypothetical protein - 7e-15 At4g26240 unknown protein O.I. H.G. S.X.
0.80 96.0 0.96 Ptp.7787.1.S1_s_at DN499212 - - 4e+0 At2g05642 - O.I. H.G. S.X.
0.60 86.0 0.96 PtpAffx.135882.1.A1_at CV281275 hypothetical protein - 1e-7 At1g78420 protein binding / zinc ion binding O.I. H.G. S.X.
0.46 73.7 0.96 Ptp.2558.1.S1_at CK096344 hypothetical protein - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.44 71.9 0.96 PtpAffx.12253.1.A1_at CV225881 hypothetical protein - 3e+0 At4g32960 unknown protein O.I. H.G. S.X.
0.43 69.7 0.96 PtpAffx.25116.1.A1_at CV228813 hypothetical protein - 2e-8 At3g54130 josephin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.35	59.7	0.96	Ptp.5593.1.S1_at	DN495608	hypothetical protein	-	7e-15	At4g26240	unknown protein	O.I.	H.G.	S.X.
0.80	96.0	0.96	Ptp.7787.1.S1_s_at	DN499212	-	-	4e+0	At2g05642	-	O.I.	H.G.	S.X.
0.60	86.0	0.96	PtpAffx.135882.1.A1_at	CV281275	hypothetical protein	-	1e-7	At1g78420	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.46	73.7	0.96	Ptp.2558.1.S1_at	CK096344	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.
0.44	71.9	0.96	PtpAffx.12253.1.A1_at	CV225881	hypothetical protein	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.
0.43	69.7	0.96	PtpAffx.25116.1.A1_at	CV228813	hypothetical protein	-	2e-8	At3g54130	josephin family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	96.0	0.94	PtpAffx.18657.1.S1_at	CV239198	-	-	9e-2	At4g18140	phosphatase	O.I.	H.G.	S.X.
0.60	86.0	0.95	PtpAffx.67630.1.A1_at	DN491193	hypothetical protein	-	3e-4	At3g02410	-	O.I.	H.G.	S.X.
0.55	82.2	0.95	Ptp.51.1.A1_at	CV257322	hypothetical protein	-	3e-9	At5g12310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.55	82.2	0.95	PtpAffx.68799.1.S1_at	BU822076	hypothetical protein	-	1e+0	At3g61980	serine protease inhibitor, Kazal-type family protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.11535.6.S1_at	CX178705	hypothetical protein	-	2e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.203319.1.S1_s_at	pmrna6599	hypothetical protein	-	4e-43	At1g64630	WNK10 (WITH NO LYSINE KINASE 10)	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.2043.1.S1_a_at	CV243667	hypothetical protein	-	1e-17	At2g01930	BPC1 (BASIC PENTACYSTEINE1)	O.I.	H.G.	S.X.
0.48	75.4	0.96	PtpAffx.15375.1.S1_at	CV232670	-	-	5e-20	At3g53000	AtPP2-A15 (Phloem protein 2-A15)	O.I.	H.G.	S.X.
0.46	73.7	0.95	Ptp.4662.1.S1_s_at	CK093014	hypothetical protein	-	5e-13	At4g15420	PRLI-interacting factor K	O.I.	H.G.	S.X.
0.44	71.9	0.92	Ptp.3956.1.S1_at	BU861989	-	-	2e+0	At3g42160	pectinesterase-related	O.I.	H.G.	S.X.
0.44	71.9	0.94	PtpAffx.223640.1.S1_s_at	pmrna41727	hypothetical protein	-	9e-1	At5g40850	UPM1 (UROPHORPHYRIN METHYLASE 1)	O.I.	H.G.	S.X.
0.44	71.9	0.97	Ptp.2672.1.A1_at	CV254014	hypothetical protein	-	1e-67	At1g51590	mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.70613.1.S1_at	AJ769236	hypothetical protein	-	5e-28	At2g16710	hesB-like domain-containing protein	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.210637.1.S1_at	pmrna20865	hypothetical protein	-	1e-17	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.17764.1.A1_at	CV262921	Cl-channel clc-7	-	2e-30	At5g26240	CLC-D (CHLORIDE CHANNEL D)	O.I.	H.G.	S.X.
0.38	63.7	0.93	PtpAffx.11476.1.S1_at	CV264485	hypothetical protein	-	2e-31	At2g39800	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)	O.I.	H.G.	S.X.
0.38	63.7	0.94	Ptp.1557.2.S1_s_at	BI120353	-	-	1e-3	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	O.I.	H.G.	S.X.
0.38	63.7	0.96	PtpAffx.67146.1.S1_s_at	BI120910	hypothetical protein	-	1e-30	At1g07510	ftsh10 (FtsH protease 10)	O.I.	H.G.	S.X.
0.36	61.6	0.93	PtpAffx.209305.1.S1_at	pmrna18391	hypothetical protein	-	2e+0	At3g01390	VMA10 (VACUOLAR MEMBRANE ATPASE 10)	O.I.	H.G.	S.X.
0.36	61.6	0.93	PtpAffx.211715.1.S1_at	pmrna22956	hypothetical protein	-	2e-10	At1g56460	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.
0.35	59.7	0.92	PtpAffx.214513.1.S1_at	pmrna28224	hypothetical protein	-	7e-5	At4g32070	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.158986.1.S1_at	CV131955	hypothetical protein	-	2e-18	At1g68140	-	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.12192.2.A1_at	CV243678	-	-	4e-17	At5g04430	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.210652.1.S1_s_at	pmrna20892	hypothetical protein	-	2e-15	At4g24900	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.201626.1.S1_at	pmrna3217	hypothetical protein	-	4e-50	At2g21410	VHA-A2 (VACUOLAR PROTON ATPASE A2)	O.I.	H.G.	S.X.
0.33	57.5	0.95	Ptp.31.2.S1_s_at	CV252955	hypothetical protein	-	2e-5	At4g29340	PRF4 (PROFILIN 4)	O.I.	H.G.	S.X.
0.33	57.5	0.96	Ptp.5357.1.S1_at	CV237205	hypothetical protein	-	5e-69	At4g17530	ATRAB1C	O.I.	H.G.	S.X.
0.33	57.5	0.96	Ptp.663.1.S1_x_at	AY302065.1	hypothetical protein	-	1e-90	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.
0.32	55.2	0.93	PtpAffx.75547.1.A1_at	CV266178	hypothetical protein	-	8e+0	At4g16360	AMP-activated protein kinase	O.I.	H.G.	S.X.
0.32	55.2	0.93	PtpAffx.48890.1.A1_at	CX655572	auxin efflux carrier component, auxin transport protein	-	1e-25	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.
0.30	52.0	0.95	PtpAffx.12458.1.S1_at	CV226822	-	-	2e-8	At5g20650	COPT5	O.I.	H.G.	S.X.
0.30	52.0	0.95	PtpAffx.200764.1.S1_s_at	pmrna1480	hypothetical protein	-	1e-36	At5g59210	myosin heavy chain-related	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.43623.2.A1_a_at	CV227115	hypothetical protein	-	7e-5	At3g03610	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.122847.1.S1_at	BU895628	hypothetical protein	-	4e-11	At4g20380	zinc finger protein (LSD1)	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.121458.1.A1_s_at	CV239175	hypothetical protein	-	3e-14	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.135.1.S1_a_at	DN486180	hypothetical protein	-	4e-5	At5g61500	ATG3	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.43937.1.S1_s_at	BP926853	hypothetical protein	-	9e-1	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.7210.2.A1_at	BP930061	hypothetical protein	-	1e-9	At2g46260	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.213002.1.S1_at	pmrna25425	-	-	2e-28	At4g19900	glycosyl transferase-related	O.I.	H.G.	S.X.
0.27	47.1	0.95	PtpAffx.202780.1.S1_s_at	pmrna5529	hypothetical protein	-	4e-9	At1g58110	bZIP family transcription factor	O.I.	H.G.	S.X.
0.27	47.1	0.95	PtpAffx.99255.1.S1_s_at	CK090997	hypothetical protein	-	3e-2	At3g59770	SAC9	O.I.	H.G.	S.X.
0.26	45.2	0.92	PtpAffx.217256.1.S1_at	pmrna32445	hypothetical protein	-	4e-30	At5g58190	ECT10	O.I.	H.G.	S.X.
0.26	45.2	0.95	PtpAffx.131235.1.S1_s_at	CK116485	hypothetical protein	-	8e-6	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.
0.25	43.6	0.92	PtpAffx.208584.1.S1_at	pmrna17031	hypothetical protein	-	4e-1	At5g60030	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.94	PtpAffx.120111.1.S1_s_at	CX185810	bromodomain protein	-	2e-33	At1g20670	DNA-binding bromodomain-containing protein	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.208938.1.S1_s_at	pmrna17713	hypothetical protein	-	9e-158	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.
0.25	43.6	0.96	Ptp.4866.1.S1_at	CK111784	-	-	9e-105	At5g44240	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.25	43.6	0.96	PtpAffx.28339.1.S1_at	CV264979	hypothetical protein	-	1e-29	At4g38790	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 96.3 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8 86.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.4 82.3 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.4 82.3 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.7	96.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6	94.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.4	82.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.4	82.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ptp.5593.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g26240: unknown protein (HF=7e-15)
Module size	6 genes
NF	0.53
%ile	83.5

Co-expression analysis

Gene ID Ptp.5593.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At4g26240: unknown protein (HF=7e-15) Module size 6 genes NF 0.53 %ile 83.5

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.5593.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g26240: unknown protein (HF=7e-15)

Module size 6 genes

NF 0.53

%ile 83.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays