CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.5593.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g26240: unknown protein (HF=7e-15)

Module size 6 genes

NF 0.53

%ile 83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.35 59.7 0.96 Ptp.5593.1.S1_at DN495608 hypothetical protein - 7e-15 At4g26240 unknown protein O.I. H.G. S.X.
0.80 96.0 0.96 Ptp.7787.1.S1_s_at DN499212 - - 4e+0 At2g05642 - O.I. H.G. S.X.
0.60 86.0 0.96 PtpAffx.135882.1.A1_at CV281275 hypothetical protein - 1e-7 At1g78420 protein binding / zinc ion binding O.I. H.G. S.X.
0.46 73.7 0.96 Ptp.2558.1.S1_at CK096344 hypothetical protein - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.44 71.9 0.96 PtpAffx.12253.1.A1_at CV225881 hypothetical protein - 3e+0 At4g32960 unknown protein O.I. H.G. S.X.
0.43 69.7 0.96 PtpAffx.25116.1.A1_at CV228813 hypothetical protein - 2e-8 At3g54130 josephin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 96.3 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8 86.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.4 82.3 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.4 82.3 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.29030.1.S1_at, orthologous to the query gene, Ptp.5593.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 79.2 TaAffx.29030.1.S1_at At4g26240 - - 3e-2 At4g26240 unknown protein O.I. H.G. S.X.
0.47 67.9 Ta.28597.1.S1_at At4g26240 - - 1e-3 At5g21010 ATBPM5 (BTB-POZ and MATH domain 5) O.I. H.G. S.X.
0.47 67.9 Ta.9301.1.S1_at At4g26240 - - 4e-25 At1g14670 endomembrane protein 70, putative O.I. H.G. S.X.
0.44 64.5 Ta.12582.1.S1_at At4g26240 - - 2e+0 At5g51360 - O.I. H.G. S.X.
0.40 58.4 Ta.14349.1.S1_x_at At4g26240 - - 9e-26 At1g45000 26S proteasome regulatory complex subunit p42D, putative O.I. H.G. S.X.
0.36 51.9 Ta.9581.1.S1_x_at At4g26240 - - 2e+0 At4g40011 unknown protein O.I. H.G. S.X.
0.32 44.4 Ta.2643.1.S1_at At4g26240 - - 2e-7 At1g71790 F-actin capping protein beta subunit family protein O.I. H.G. S.X.
0.19 22.4 Ta.7043.1.A1_at At4g26240 - - 2e+0 At3g59470 far-red impaired responsive family protein / FAR1 family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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