Co-expression analysis

Gene ID	Ptp.5593.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g26240: unknown protein (HF=7e-15)
Module size	6 genes
NF	0.53
%ile	83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.35	59.7	0.96	Ptp.5593.1.S1_at	DN495608	hypothetical protein	-	7e-15	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	Ptp.7787.1.S1_s_at	DN499212	-	-	4e+0	At2g05642	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	PtpAffx.135882.1.A1_at	CV281275	hypothetical protein	-	1e-7	At1g78420	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.2558.1.S1_at	CK096344	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.12253.1.A1_at	CV225881	hypothetical protein	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	PtpAffx.25116.1.A1_at	CV228813	hypothetical protein	-	2e-8	At3g54130	josephin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6	94.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.4	82.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.4	82.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the barley gene, Contig21616_s_at, orthologous to the query gene, Ptp.5593.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig21616_s_at	At4g26240	-	-	8e-1	At4g18480	CHLI1	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig25654_at	At4g26240	-	-	2e+0	At3g12145	FLR1	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig2447_x_at	At4g26240	-	-	3e-1	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig25150_at	At4g26240	-	-	3e-1	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	Contig1852_at	At4g26240	-	-	1e-2	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig22666_at	At4g26240	-	-	6e-3	At3g22600	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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