Co-expression analysis

Gene ID	Ptp.5485.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g38680: GRP2 (GLYCINE RICH PROTEIN 2) (HF=7e-2)
Module size	26 genes
NF	0.07
%ile	15.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	0.78	Ptp.5485.1.S1_at	CK087871	-	-	7e-2	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.86	PtpAffx.58664.2.S1_at	CK095817	hypothetical protein	-	5e-32	At1g47740	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.89	PtpAffx.212006.1.S1_at	pmrna23577	-	-	1e-10	At5g48720	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.92	Ptp.3943.1.S1_at	CV250102	hypothetical protein	-	5e-8	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.86	Ptp.1047.1.A1_at	CK090229	hypothetical protein	-	1e+1	At5g16453	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.85	PtpAffx.22683.1.A1_at	DN491520	-	-	4e+0	At5g10590	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	PtpAffx.210307.1.S1_at	pmrna20282	hypothetical protein	-	1e-3	At3g49400	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.83	Ptp.3688.1.S1_at	DN491504	-	-	4e-1	At1g62480	vacuolar calcium-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.53559.1.S1_at	DN499994	-	-	6e-2	At4g02360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.93	PtpAffx.77771.1.A1_at	CK095223	hypothetical protein	-	6e-15	At4g21520	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.89	PtpAffx.221877.1.S1_x_at	pmrna38978	hypothetical protein	-	2e+0	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.91	PtpAffx.215513.1.S1_at	pmrna29755	f-box family protein	-	4e-4	At4g00940	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	PtpAffx.26558.3.S1_s_at	CN524616	hypothetical protein	-	4e-1	At3g26380	glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.91	PtpAffx.215954.1.S1_at	pmrna30436	hypothetical protein	-	9e-13	At3g21430	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.88	PtpAffx.214108.1.S1_at	pmrna27460	dicer-like protein	-	2e-6	At3g43920	ribonuclease III family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.88	PtpAffx.214757.1.S1_at	pmrna28594	hypothetical protein	-	6e-1	At3g05625	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.157493.1.S1_at	BI121045	hypothetical protein	-	3e-1	At2g21010	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.91	PtpAffx.40910.1.S1_at	BU830361	hypothetical protein	-	1e+0	At2g43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.92	PtpAffx.81831.1.S1_at	CV271583	hypothetical protein	-	3e-2	At5g37055	SEF (SERRATED LEAVES AND EARLY FLOWERING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.87	PtpAffx.80318.1.A1_at	DN492680	autoinhibited calcium ATPase	-	4e-4	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.93	PtpAffx.219810.1.S1_s_at	pmrna35924	hypothetical protein	-	5e-2	At5g51670	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.91	PtpAffx.58457.2.S1_s_at	BU874034	GRAS family transcription factor	-	3e-7	At2g37650	scarecrow-like transcription factor 9 (SCL9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.87	PtpAffx.19937.1.S1_at	CK097765	-	-	1e+0	At4g08570	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.91	PtpAffx.213782.1.S1_at	pmrna26907	hypothetical protein	-	1e-1	At3g57970	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.87	PtpAffx.107361.1.S1_at	DN500638	-	-	9e-1	At1g16225	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.90	PtpAffx.211972.1.S1_at	pmrna23507	hypothetical protein	-	2e-28	At3g25440	RNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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