Co-expression analysis

Gene ID	Ptp.5459.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g55490: CPN60B (CHAPERONIN 60 BETA) (HF=6e-74)
Module size	23 genes
NF	0.44
%ile	72.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	96.1	0.93	Ptp.5459.1.S1_at	CV257765	hypothetical protein	-	6e-74	At1g55490	CPN60B (CHAPERONIN 60 BETA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	Ptp.7668.1.S1_at	CV271365	hypothetical protein	-	4e+0	At3g23320	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	PtpAffx.49598.1.A1_s_at	CV278478	-	-	5e-3	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	Ptp.4956.1.A1_at	CV240469	hypothetical protein	-	7e-12	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.201033.1.S1_at	pmrna2027	-	-	3e-31	At3g27180	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.274.1.S1_at	BP934578	-	-	3e-36	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.4824.1.S1_at	CX175451	hypothetical protein	-	5e+0	At5g51390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.97	Ptp.5695.1.S1_a_at	CV237546	hypothetical protein	-	7e-21	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.94	Ptp.2145.1.A1_at	CV280771	hypothetical protein	-	9e-9	At3g08740	elongation factor P (EF-P) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.92	PtpAffx.150070.1.S1_at	DN500973	hypothetical protein	-	1e+0	At2g07505	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.97	PtpAffx.9317.1.S1_at	CV241750	hypothetical protein	-	1e+0	At4g14385	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.96	PtpAffx.7681.2.A1_at	CK091882	hypothetical protein	-	4e-17	At3g52150	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.95	PtpAffx.213506.1.S1_at	pmrna26403	hypothetical protein	-	3e-17	At3g53460	CP29	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.4956.1.A1_x_at	CV240469	hypothetical protein	-	7e-12	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	PtpAffx.36466.1.S1_at	BU891445	hypothetical protein	-	3e-15	At2g41950	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	Ptp.5340.1.S1_at	CV252953	-	-	8e-6	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.95	PtpAffx.18034.1.A1_at	CV257108	hypothetical protein	-	1e-8	At3g21200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.95	Ptp.6638.1.S1_s_at	CV244428	hypothetical protein	-	5e-22	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.96	PtpAffx.18452.1.A1_at	CV233933	hypothetical protein	-	4e-61	At5g45390	CLPP4 (CLP PROTEASE P4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.95	PtpAffx.6001.1.S1_at	CV237297	hypothetical protein	-	3e-43	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	PtpAffx.249.667.S1_a_at	CV278012	hypothetical protein	-	6e-2	At2g32650	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.93	PtpAffx.215186.1.S1_at	pmrna29233	-	-	4e-73	At3g21300	RNA methyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.95	PtpAffx.3462.1.A1_s_at	CV245780	2-cys peroxiredoxin /// 2-cys peroxiredoxin	-	4e-66	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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