Co-expression analysis

Gene ID	Ptp.5458.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g22650: HD2B (HISTONE DEACETYLASE 2B) (HF=2e+0)
Module size	7 genes
NF	0.39
%ile	66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.96	Ptp.5458.1.S1_s_at	CV261214	hypothetical protein	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	Ptp.6063.1.S1_at	CV231920	hypothetical protein	-	8e-9	At5g06660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	PtpAffx.119499.2.A1_s_at	BP930188	hypothetical protein	-	3e-52	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	Ptp.1502.3.S1_a_at	CX167776	hypothetical protein	-	9e-8	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.5430.1.S1_x_at	CF228221	hypothetical protein	-	1e-103	At1g19910	AVA-P2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.219771.1.S1_at	pmrna35835	hypothetical protein	-	4e-25	At2g36960	TKI1 (TSL-kinase interacting protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.96	PtpAffx.113217.1.S1_s_at	CN520202	hypothetical protein	-	1e-32	At2g25310	carbohydrate binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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