Co-expression analysis

Gene ID	Ptp.543.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g09490: chloroplast lumen common family protein (HF=4e+0)
Module size	6 genes
NF	0.10
%ile	21.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.87	Ptp.543.1.A1_at	CK088475	-	-	4e+0	At3g09490	chloroplast lumen common family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.89	PtpAffx.214257.1.S1_at	pmrna27740	hypothetical protein	-	8e-2	At2g02230	AtPP2-B1 (Phloem protein 2-B1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.85	PtpAffx.208444.1.S1_at	pmrna16776	hypothetical protein	-	3e-1	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.87	PtpAffx.3429.2.S1_at	DN491388	hypothetical protein	-	2e+0	At5g04700	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.88	PtpAffx.220669.1.S1_at	pmrna37079	hypothetical protein	-	4e+1	At5g51910	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.85	PtpAffx.213415.1.S1_at	pmrna26240	hypothetical protein	-	4e+0	At2g17870	cold-shock DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.88478.2.S1_at, orthologous to the query gene, Ptp.543.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	71.7	GmaAffx.88478.2.S1_at	At3g09490	-	-	2e-4	At3g08640	alphavirus core protein family	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.40503.1.S1_at	At3g09490	-	-	3e+0	At2g33480	ANAC041 (Arabidopsis NAC domain containing protein 41)	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.93557.1.S1_s_at	At3g09490	Enolase	-	2e-74	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.2650.2.S1_at	At3g09490	-	-	2e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.93126.1.S1_s_at	At3g09490	-	-	5e-12	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.51889.1.S1_at	At3g09490	-	-	2e-32	At4g32390	phosphate translocator-related	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.78674.1.S1_at	At3g09490	-	-	2e-10	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.77414.1.S1_at	At3g09490	-	-	2e-14	At4g27585	band 7 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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