Co-expression analysis

Gene ID	Ptp.532.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g26850: dehydration-responsive family protein (HF=1e-4)
Module size	17 genes
NF	0.51
%ile	81.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.6	0.96	Ptp.532.1.S1_at	CK088410	hypothetical protein	-	1e-4	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	Ptp.929.1.S1_at	CK100278	hypothetical protein	-	5e-1	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	Ptp.3067.1.S1_at	AJ744954.1	iaa-amino acid hydrolase 11	-	9e-44	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.97	PtpAffx.20277.1.A1_a_at	CK092297	-	-	6e+0	At5g37900	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	Ptp.2346.1.S1_at	CK093262	hypothetical protein	-	1e-23	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	Ptp.6280.1.S1_at	BU835480	-	-	4e-4	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	PtpAffx.158107.3.S1_at	CK088568	hypothetical protein	-	7e+0	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.98	PtpAffx.15456.1.S1_at	CF229022	arginine methyltransferease	-	1e-15	At2g19670	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.97	Ptp.7136.1.A1_at	DN486671	hypothetical protein	-	4e-8	At3g16760	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.97	Ptp.4153.1.S1_at	DN499432	-	-	1e+1	At5g65533	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.97	Ptp.4383.1.S1_at	BU831203	hypothetical protein	-	2e-73	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.96	PtpAffx.4136.1.S1_at	CV248527	hypothetical protein	-	8e-8	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.97	Ptp.1815.1.S1_at	CV263204	hypothetical protein	-	7e-139	At5g20000	26S proteasome AAA-ATPase subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	Ptp.4048.1.S1_at	CF232419	-	-	2e-27	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	PtpAffx.116752.1.A1_at	CK089889	-	-	1e+0	At2g03420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	PtpAffx.123671.1.A1_at	CV261233	endoplasmic reticulum [ER]-type calcium ATPase /// endoplasmic reticulum [ER]-type calcium ATPase	-	6e-2	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	Ptp.4292.1.S1_at	BU834082	-	-	1e-16	At3g11530	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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