CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.5238.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g53400: unknown protein (HF=5e-28)

Module size 6 genes

NF 0.37

%ile 63.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 0.95 Ptp.5238.1.S1_s_at BU887108 hypothetical protein - 5e-28 At1g53400 unknown protein O.I. H.G. S.X.
0.50 78.6 0.96 Ptp.4771.1.S1_at BU893475 hypothetical protein - 1e-10 At4g19670 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.215067.1.S1_at pmrna29028 hypothetical protein - 3e-5 At2g21120 unknown protein O.I. H.G. S.X.
0.33 57.5 0.96 PtpAffx.141519.1.S1_at AJ774599 hypothetical protein - 2e-120 At5g64070 PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) O.I. H.G. S.X.
0.26 45.2 0.95 PtpAffx.217931.1.S1_s_at pmrna33398 hypothetical protein - 9e-11 At1g17820 phosphoinositide binding O.I. H.G. S.X.
0.22 38.3 0.95 PtpAffx.201241.1.S1_s_at pmrna2464 hypothetical protein - 2e-13 At1g50730 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 96.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os01g0731000, orthologous to the query gene, Ptp.5238.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 Os01g0731000 At1g53400 - Conserved hypothetical protein 6e-12 At1g16960 unknown protein O.I. H.G. S.X.
0.18 13.7 Os08g0440000 At1g53400 - Vesicle transport v-SNARE family protein 2e-3 At1g15880 GOS11 (golgi snare 11) O.I. H.G. S.X.
0.14 9.3 Os03g0666500 At1g53400 - Ras-related protein RHA1 9e-40 At5g45130 RHA1 (RAB HOMOLOG 1) O.I. H.G. S.X.
0.14 9.3 Os01g0624500 At1g53400 - Sgt1 5e-14 At4g11260 SGT1B O.I. H.G. S.X.
0.12 7.2 Os07g0694700 At1g53400 - Ascorbate peroxidase (EC 1.11.1.11) 4e-25 At1g07890 APX1 (ascorbate peroxidase 1) O.I. H.G. S.X.
0.07 3.7 Os02g0580300 At1g53400 - 14-3-3-like protein GF14-6 1e-40 At3g02520 GRF7 (GENERAL REGULATORY FACTOR 7) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage