Co-expression analysis

Gene ID Ptp.5238.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g53400: unknown protein (HF=5e-28)
Module size 6 genes
NF 0.37
%ile 63.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.95Ptp.5238.1.S1_s_atBU887108hypothetical protein-5e-28At1g53400unknown proteinO.I.H.G.S.X.
0.5078.60.96Ptp.4771.1.S1_atBU893475hypothetical protein-1e-10At4g19670zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.215067.1.S1_atpmrna29028hypothetical protein-3e-5At2g21120unknown proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.141519.1.S1_atAJ774599hypothetical protein-2e-120At5g64070PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)O.I.H.G.S.X.
0.2645.20.95PtpAffx.217931.1.S1_s_atpmrna33398hypothetical protein-9e-11At1g17820phosphoinositide bindingO.I.H.G.S.X.
0.2238.30.95PtpAffx.201241.1.S1_s_atpmrna2464hypothetical protein-2e-13At1g50730unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.992.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig16370_at, orthologous to the query gene, Ptp.5238.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.1Contig16370_atAt1g53400--3e-8At5g45740unknown proteinO.I.H.G.S.X.
0.4661.0Contig16921_atAt1g53400--3e-3At2g40830RHC1AO.I.H.G.S.X.
0.4661.0Contig5542_atAt1g53400--6e-4At3g54640TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)O.I.H.G.S.X.
0.3342.6HM04D16u_s_atAt1g53400--3e+0At5g10400histone H3O.I.H.G.S.X.
0.2732.1Contig7205_atAt1g53400--2e-2At2g32550rcd1-like cell differentiation family proteinO.I.H.G.S.X.
0.1919.6Contig20160_atAt1g53400--8e-2At3g59740receptor lectin kinase 3 (lecRK3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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