Co-expression analysis

Gene ID	Ptp.5085.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g76140: serine-type endopeptidase/ serine-type peptidase (HF=3e-36)
Module size	10 genes
NF	0.55
%ile	86.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.93	Ptp.5085.1.S1_s_at	CV227488	hypothetical protein	-	3e-36	At1g76140	serine-type endopeptidase/ serine-type peptidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.92	PtpAffx.48155.1.S1_at	CV245590	GRAS family transcription factor	-	6e-7	At5g52510	scarecrow-like transcription factor 8 (SCL8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.90	PtpAffx.203117.1.S1_at	pmrna6177	hypothetical protein	-	3e-90	At4g19040	EDR2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.93	PtpAffx.207094.1.S1_at	pmrna14061	hypothetical protein	-	3e-65	At5g65290	LMBR1 integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.94	Ptp.399.1.A1_at	CK088846	hypothetical protein	-	3e-8	At3g61160	shaggy-related protein kinase beta / ASK-beta (ASK2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.92	PtpAffx.208606.1.S1_s_at	pmrna17078	hypothetical protein	-	2e-10	At3g23980	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.93	PtpAffx.84285.1.A1_at	CV272014	hypothetical protein	-	5e-1	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.145915.1.S1_at	BU815760	hypothetical protein	-	2e-50	At2g07180	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	PtpAffx.161323.1.S1_a_at	CX186124	hypothetical protein	-	1e-53	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.93	PtpAffx.200596.1.S1_s_at	pmrna1178	amino acid transporter /// amino acid transporter /// amino acid transporter	-	6e-26	At1g80510	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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