Co-expression analysis

Gene ID	Ptp.5068.2.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g29170: unknown protein (HF=6e-3)
Module size	6 genes
NF	0.46
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	Ptp.5068.2.A1_a_at	CV247817	hypothetical protein	-	6e-3	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	Ptp.5068.1.S1_a_at	DN483716	hypothetical protein	-	6e-3	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.11720.1.S1_at	CV256791	hypothetical protein	-	1e-5	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	PtpAffx.134721.1.S1_at	CV256564	hypothetical protein	-	3e-71	At5g24520	TTG1 (TRANSPARENT TESTA GLABRA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.112916.1.A1_at	CV255627	hypothetical protein	-	1e-7	At1g76920	F-box family protein (FBX3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	Ptp.7379.2.A1_a_at	CV265090	hypothetical protein	-	1e-32	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	90.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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