Co-expression analysis

Gene ID	Ptp.5068.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g29170: unknown protein (HF=6e-3)
Module size	8 genes
NF	0.49
%ile	79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	Ptp.5068.1.S1_a_at	DN483716	hypothetical protein	-	6e-3	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.96	Ptp.5068.2.A1_a_at	CV247817	hypothetical protein	-	6e-3	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.134721.1.S1_at	CV256564	hypothetical protein	-	3e-71	At5g24520	TTG1 (TRANSPARENT TESTA GLABRA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.7148.1.S1_at	CV265829	-	-	2e-25	At3g30390	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.249.310.S1_at	BU830668	hypothetical protein	-	4e-12	At5g42050	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	PtpAffx.112916.1.A1_at	CV255627	hypothetical protein	-	1e-7	At1g76920	F-box family protein (FBX3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	Ptp.7379.2.A1_a_at	CV265090	hypothetical protein	-	1e-32	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.5250.1.A1_a_at	CV255920	hypothetical protein	-	1e+0	At5g65130	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	90.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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