Co-expression analysis

Gene ID	Ptp.4952.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g59900: AT-E1 ALPHA (HF=4e-89)
Module size	6 genes
NF	0.34
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.93	Ptp.4952.1.S1_at	CV228949	hypothetical protein	-	4e-89	At1g59900	AT-E1 ALPHA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	Ptp.7276.1.S1_at	CV247092	hypothetical protein	-	3e-8	At3g48140	senescence-associated protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.93	Ptp.198.1.A1_at	CV259081	-	-	1e+0	At1g25260	acidic ribosomal protein P0-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.57186.1.A1_a_at	CV233728	hypothetical protein /// gdp-mannose 4,6-dehydratase	-	8e-49	At3g51160	MUR1 (MURUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.93	PtpAffx.217249.1.S1_at	pmrna32436	hypothetical protein	-	5e-97	At4g27690	VPS26B (VACUOLAR PROTEIN SORTING 26B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.93	PtpAffx.249.708.A1_s_at	CV258093	hypothetical protein	-	1e+1	Atcg00380	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.8	94.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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