Co-expression analysis

Gene ID Ptp.4933.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g11920: glutaredoxin-related (HF=9e-19)
Module size 6 genes
NF 0.44
%ile 73.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.93Ptp.4933.1.S1_atDN490851hypothetical protein-9e-19At3g11920glutaredoxin-relatedO.I.H.G.S.X.
0.5582.20.92PtpAffx.211137.1.S1_atpmrna21879hypothetical protein-5e-8At3g03540NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5)O.I.H.G.S.X.
0.5078.60.92PtpAffx.22865.1.S1_atDN484594hypothetical protein-3e-5At3g09020alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing proteinO.I.H.G.S.X.
0.4471.90.91Ptp.4515.1.S1_s_atCV253179hypothetical protein-5e-79At5g47770FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)O.I.H.G.S.X.
0.3357.50.94PtpAffx.5423.1.S1_s_atCV229504hypothetical protein-3e-24At4g11820MVA1O.I.H.G.S.X.
0.2747.10.92PtpAffx.11966.1.A1_atCV245062hypothetical protein-1e-1At3g15760unknown proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1618640_at, orthologous to the query gene, Ptp.4933.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5072.71618640_atAt3g11920hypothetical protein LOC100263256-5e+0Atcg01310-O.I.H.G.S.X.
0.7189.51618096_s_atAt3g11920ripening-related protein-like-6e+0At2g16340unknown proteinO.I.H.G.S.X.
0.5072.71615974_atAt3g11920ripening-related protein-like-2e+0At1g62770invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.2124.01611797_atAt3g11920hypothetical protein LOC100257001-3e-38At2g30060Ran-binding protein 1b (RanBP1b)O.I.H.G.S.X.
0.1515.61610099_atAt3g11920hypothetical protein LOC100250035-5e-6At5g50000protein kinase, putativeO.I.H.G.S.X.
0.1212.11619079_s_atAt3g11920hypothetical protein LOC100240809-1e-79At5g48230ACAT2 (ACETOACETYL-COA THIOLASE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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