Co-expression analysis

Gene ID	Ptp.4933.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g11920: glutaredoxin-related (HF=9e-19)
Module size	6 genes
NF	0.44
%ile	73.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.93	Ptp.4933.1.S1_at	DN490851	hypothetical protein	-	9e-19	At3g11920	glutaredoxin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.92	PtpAffx.211137.1.S1_at	pmrna21879	hypothetical protein	-	5e-8	At3g03540	NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.22865.1.S1_at	DN484594	hypothetical protein	-	3e-5	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.91	Ptp.4515.1.S1_s_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.5423.1.S1_s_at	CV229504	hypothetical protein	-	3e-24	At4g11820	MVA1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.11966.1.A1_at	CV245062	hypothetical protein	-	1e-1	At3g15760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1618640_at, orthologous to the query gene, Ptp.4933.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1618640_at	At3g11920	hypothetical protein LOC100263256	-	5e+0	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.71	89.5	1618096_s_at	At3g11920	ripening-related protein-like	-	6e+0	At2g16340	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1615974_at	At3g11920	ripening-related protein-like	-	2e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1611797_at	At3g11920	hypothetical protein LOC100257001	-	3e-38	At2g30060	Ran-binding protein 1b (RanBP1b)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1610099_at	At3g11920	hypothetical protein LOC100250035	-	5e-6	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.12	12.1	1619079_s_at	At3g11920	hypothetical protein LOC100240809	-	1e-79	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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