Co-expression analysis

Gene ID	Ptp.488.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g28630: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.51
%ile	81.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.92	Ptp.488.1.A1_at	CK087424	hypothetical protein	-	2e-1	At1g28630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	Ptp.2625.1.S1_at	CK093627	hypothetical protein	-	7e+0	At1g19180	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	Ptp.7152.1.A1_at	DN488191	hypothetical protein	-	4e-2	At1g62530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.93	PtpAffx.26991.1.S1_at	DN487309	hypothetical protein	-	3e-6	At4g12000	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.93	PtpAffx.8674.4.S1_at	CV233756	hypothetical protein	-	5e-7	At2g33510	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	Ptp.8005.1.S1_at	DN503222	hypothetical protein	-	4e-1	At5g35180	phosphoinositide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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