Co-expression analysis

Gene ID	Ptp.4852.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g50100: - (HF=5e-22)
Module size	12 genes
NF	0.36
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	91.7	0.87	Ptp.4852.1.A1_at	CV282615	hypothetical protein	-	5e-22	At5g50100	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.88	Ptp.4852.1.A1_s_at	CV282615	hypothetical protein	-	5e-22	At5g50100	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.91	PtpAffx.39416.1.A1_at	CV254535	hypothetical protein	-	2e+0	At1g22750	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.87	Ptp.5158.1.S1_x_at	CK090943	1-aminocyclopropane-1-carboxylate	-	3e-34	At1g12010	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.9234.1.A1_s_at	BI122577	hypothetical protein	-	9e-3	At5g18140	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.24871.1.A1_at	CV243107	-	-	4e-1	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.91	PtpAffx.49041.1.S1_at	CV265070	hypothetical protein	-	3e-84	At1g08510	FATB (fatty acyl-ACP thioesterases B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.91	PtpAffx.17383.2.A1_s_at	CV283276	hypothetical protein	-	8e-12	At2g45740	PEX11D	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.91	PtpAffx.58773.1.A1_at	CK091196	hypothetical protein	-	4e-16	At1g78290	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.89	PtpAffx.7188.1.A1_at	CK107538	hypothetical protein	-	2e+0	At2g18660	EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.92	PtpAffx.52902.1.A1_at	CV231677	hypothetical protein	-	2e-3	At2g25820	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.90	PtpAffx.38274.1.A1_a_at	CV257914	hypothetical protein	-	4e+0	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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