Co-expression analysis

Gene ID	Ptp.4830.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g03260: leucine-rich repeat family protein (HF=2e-13)
Module size	7 genes
NF	0.49
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.91	Ptp.4830.1.S1_at	CX282622	hypothetical protein	-	2e-13	At4g03260	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.92	Ptp.6007.1.S1_at	CK090586	hypothetical protein	-	6e-22	At3g63260	ATMRK1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.66249.1.S1_at	CK095129	hypothetical protein	-	8e-6	At1g79160	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	Ptp.8005.1.S1_at	DN503222	hypothetical protein	-	4e-1	At5g35180	phosphoinositide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.92	PtpAffx.138124.1.S1_s_at	BI120454	hypothetical protein	-	3e-54	At3g22750	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.25513.1.A1_at	DN484974	magnesium transporter	-	3e-5	At2g03620	magnesium transporter CorA-like family protein (MRS2-5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.34911.2.A1_at	CK094204	hypothetical protein	-	1e+0	At1g20310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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