Co-expression analysis

Gene ID Ptp.4827.1.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g43450: 2-oxoglutarate-dependent dioxygenase, putative (HF=3e-12)
Module size 37 genes
NF 0.56
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8697.40.89Ptp.4827.1.S1_a_atDN490862hypothetical protein-3e-12At5g434502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.8196.10.92Ptp.1053.1.A1_atCK090255histone deacetylase-3e-3At4g33470hda14 (histone deacetylase 14)O.I.H.G.S.X.
0.7794.90.93Ptp.6035.1.S1_atCK093865hypothetical protein-2e+0At5g14110unknown proteinO.I.H.G.S.X.
0.7292.70.93Ptp.6017.2.S1_atCV277478hypothetical protein-3e-34At3g15840PIFI (post-illumination chlorophyll fluorescence increase)O.I.H.G.S.X.
0.7192.60.93Ptp.5156.1.S1_atBU815588hypothetical protein-9e-8At3g47650bundle-sheath defective protein 2 family / bsd2 familyO.I.H.G.S.X.
0.7192.60.92PtpAffx.94770.1.A1_atCV281703hypothetical protein-2e-27At1g78780pathogenesis-related family proteinO.I.H.G.S.X.
0.7192.60.93PtpAffx.79261.1.S1_a_atDN487076hypothetical protein-3e-49At3g19900unknown proteinO.I.H.G.S.X.
0.6891.30.92PtpAffx.54856.1.S1_atDN485617tir-nbs-lrr resistance protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// nbs-lrr resistance protein-8e+0At5g10336unknown proteinO.I.H.G.S.X.
0.6588.60.93PtpAffx.62386.1.A1_atCV232995--2e+0At5g23090NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)O.I.H.G.S.X.
0.6588.60.90Ptp.7780.1.S1_atDN499145precursor of transferase serine hydroxymethyltransferase 7-7e-11At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6388.10.94PtpAffx.135336.1.S1_atDN496303hypothetical protein-4e-3At3g57740protein kinase family proteinO.I.H.G.S.X.
0.6086.00.94Ptp.3833.1.S1_atDN488214hypothetical protein-4e-1At1g34770MAGE-8 antigen-relatedO.I.H.G.S.X.
0.6086.00.89PtpAffx.70620.1.S1_atCF236948hypothetical protein-2e-25At3g55580regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.6086.00.92Ptp.1232.1.S1_atBI122968hypothetical protein-2e-19At1g49630ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2)O.I.H.G.S.X.
0.5784.20.92PtpAffx.116749.1.A1_atCK090030hypothetical protein-1e-8At3g10230LYC (LYCOPENE CYCLASE)O.I.H.G.S.X.
0.5784.20.92PtpAffx.12184.2.S1_atCX657795hypothetical protein-1e+0At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.5683.90.94Ptp.6036.2.A1_atDN490595hypothetical protein-2e-1At3g27030unknown proteinO.I.H.G.S.X.
0.5683.90.93PtpAffx.5772.6.S1_atBU889050hypothetical protein-1e+0At4g15030unknown proteinO.I.H.G.S.X.
0.5582.20.93PtpAffx.85994.1.S1_atDN500500--3e+0At3g56890F-box family protein-relatedO.I.H.G.S.X.
0.5480.80.93Ptp.1744.1.S1_atCK093605hypothetical protein-4e-11At1g17745PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE)O.I.H.G.S.X.
0.5480.80.92PtpAffx.138019.1.S1_s_atCK105049hypothetical protein-1e-14At1g08550NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1)O.I.H.G.S.X.
0.5480.80.94Ptp.6820.1.S1_atBU811893hypothetical protein-1e-22At5g20380PHT4O.I.H.G.S.X.
0.5178.90.92Ptp.4547.1.S1_atCV258827magnesium transporter-3e-1At1g31130unknown proteinO.I.H.G.S.X.
0.5178.90.95Ptp.7701.1.A1_atCV265872--2e-9At3g18490aspartyl protease family proteinO.I.H.G.S.X.
0.5178.90.92Ptp.2947.1.S1_atDN489526hypothetical protein-1e-1At4g24973-O.I.H.G.S.X.
0.5178.90.93PtpAffx.132098.1.A1_atDN490875hypothetical protein-2e-5At1g17220FUG1 (fu-gaeri1)O.I.H.G.S.X.
0.5078.60.92PtpAffx.67441.1.S1_atDN498585hypothetical protein-3e-4At1g73110ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putativeO.I.H.G.S.X.
0.4975.70.92PtpAffx.90835.1.A1_atCK089474hypothetical protein-3e+0At2g18810DNA bindingO.I.H.G.S.X.
0.4875.40.93Ptp.5190.1.S1_atBU811611hypothetical protein-2e-6At5g42810ATIPK1 (Inositol-pentakisphosphate 2-kinase 1)O.I.H.G.S.X.
0.4774.60.93Ptp.1188.1.A1_atCK089860--3e+0At4g26800pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4774.60.94Ptp.3981.2.A1_atCK089692--3e+0At5g52730heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4774.60.92PtpAffx.1169.13.S1_a_atCK093841hypothetical protein-9e-1At4g03380-O.I.H.G.S.X.
0.4673.70.90Ptp.4954.1.S1_atDN490744--9e-2At4g28815transcription regulatorO.I.H.G.S.X.
0.4572.30.93Ptp.7649.1.S1_atBI125474cinnamyl alcohol dehydrogenase-like protein-5e-6At4g37970CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)O.I.H.G.S.X.
0.4471.90.89Ptp.6220.2.A1_s_atCV263023--3e-5At1g22160senescence-associated protein-relatedO.I.H.G.S.X.
0.4369.70.92PtpAffx.26385.1.S1_atCK089971hypothetical protein-3e+0At1g59590ZCF37O.I.H.G.S.X.
0.4067.00.90PtpAffx.67540.1.A1_s_atDN488093hypothetical protein-8e-1At4g15270glucosyltransferase-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.088.0GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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