Co-expression analysis

Gene ID Ptp.476.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g08030: unknown protein (HF=8e-3)
Module size 6 genes
NF 0.41
%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.91Ptp.476.1.S1_atCK087241hypothetical protein-8e-3At3g08030unknown proteinO.I.H.G.S.X.
0.6791.10.91Ptp.476.1.S1_s_atCK087241hypothetical protein-8e-3At3g08030unknown proteinO.I.H.G.S.X.
0.6187.00.90PtpAffx.29389.1.S1_atCV227026hypothetical protein-6e-38At2g03090ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)O.I.H.G.S.X.
0.4471.90.92Ptp.6661.1.S1_s_atCK087814hypothetical protein-1e-1At3g18050unknown proteinO.I.H.G.S.X.
0.3357.50.91Ptp.4587.1.S1_s_atBP934936hypothetical protein-3e-86At4g27440PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)O.I.H.G.S.X.
0.1729.10.90PtpAffx.221954.1.S1_atpmrna39084aquaporin, MIP family, PIP subfamily-3e-11At4g35100PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.3GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage