Co-expression analysis

Gene ID	Ptp.4730.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g53260: PAL2 (HF=1e-10)
Module size	6 genes
NF	0.24
%ile	43.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.92	Ptp.4730.1.A1_s_at	CV267232	-	-	1e-10	At3g53260	PAL2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.140097.1.A1_a_at	CV272774	arogenate/prephenate dehydratase	-	5e-13	At1g11790	ADT1 (arogenate dehydratase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	Ptp.2560.3.S1_s_at	CK092469	hypothetical protein	-	2e-27	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	PtpAffx.1672.3.A1_a_at	CV271667	phenylalanine amonnia lyase	-	1e-3	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.94	Ptp.2560.1.S1_s_at	CV270621	hypothetical protein	-	1e-65	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.93	PtpAffx.4007.2.S1_at	CV233043	-	-	5e-8	At1g78150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, X97313_at, orthologous to the query gene, Ptp.4730.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	X97313_at	At3g53260	-	-	6e-7	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig10383_at	At3g53260	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig20103_at	At3g53260	-	-	4e+0	At5g20460	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig19119_at	At3g53260	-	-	5e-1	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig10380_at	At3g53260	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig10382_s_at	At3g53260	-	-	6e-38	At5g45190	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig19806_at	At3g53260	-	-	1e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig20672_x_at	At3g53260	-	-	5e+0	At5g54430	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig2617_at	At3g53260	-	-	9e-3	At1g07080	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig18034_at	At3g53260	-	-	3e-9	At5g14220	HEMG2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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