Co-expression analysis

Gene ID	Ptp.4715.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g30160: VLN4 (ARABIDOPSIS THALIANA VILLIN 4) (HF=2e-9)
Module size	6 genes
NF	0.56
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.93	Ptp.4715.2.S1_s_at	CV228991	hypothetical protein	-	2e-9	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	Ptp.2457.1.S1_s_at	CV264623	s-adenosylmethionine synthetase 2	-	2e-165	At3g17390	MTO3 (METHIONINE OVER-ACCUMULATOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	Ptp.1727.1.A1_s_at	CK093280	hypothetical protein	-	1e-7	At1g14830	ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	Ptp.1329.1.S1_s_at	CK093720	-	-	2e-78	At1g64650	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.95	Ptp.1683.1.S1_a_at	CV256655	precursor of transferase serine hydroxymethyltransferase 3	-	1e-41	At5g26780	SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.5888.1.A1_s_at	CV248932	hypothetical protein	-	6e-60	At3g09820	ADK1 (adenosine kinase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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