Co-expression analysis

Gene ID	Ptp.4669.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g53190: pectate lyase family protein (HF=8e-13)
Module size	6 genes
NF	0.60
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	Ptp.4669.1.S1_at	CK088332	-	-	8e-13	At3g53190	pectate lyase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.94	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.95	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.54313.2.S1_at	BU895504	hypothetical protein	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	Ptp.3671.1.S1_at	CK112025	hypothetical protein	-	3e-2	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.0	96.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig11004_at, orthologous to the query gene, Ptp.4669.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig11004_at	At3g53190	-	-	3e-22	At3g07010	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	Contig11955_at	At3g53190	-	-	4e-1	At3g15630	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig19483_at	At3g53190	-	-	8e-39	At1g07170	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig25763_at	At3g53190	-	-	3e-1	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig657_s_at	At3g53190	-	-	1e-49	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig10319_at	At3g53190	-	-	2e-3	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig22781_at	At3g53190	-	-	1e+1	At5g53895	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig10816_at	At3g53190	-	-	2e+0	At3g09160	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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