Co-expression analysis

Gene ID Ptp.4669.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g53190: pectate lyase family protein (HF=8e-13)
Module size 6 genes
NF 0.60
%ile 89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95Ptp.4669.1.S1_atCK088332--8e-13At3g53190pectate lyase family proteinO.I.H.G.S.X.
0.7192.60.94Ptp.789.1.S1_atCK089311hypothetical protein-8e-8At2g41820leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.6086.00.96Ptp.7764.1.S1_atDN489656hypothetical protein-5e+0At5g49170unknown proteinO.I.H.G.S.X.
0.5380.50.95Ptp.478.1.A1_atCK087253hypothetical protein-4e-1At4g25410DNA binding / transcription factorO.I.H.G.S.X.
0.4067.00.95PtpAffx.54313.2.S1_atBU895504hypothetical protein-6e-4At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)O.I.H.G.S.X.
0.4067.00.95Ptp.3671.1.S1_atCK112025hypothetical protein-3e-2At5g58580ATL63 (ARABIDOPSIS TÓO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.096.6GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig11004_at, orthologous to the query gene, Ptp.4669.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.1Contig11004_atAt3g53190--3e-22At3g07010pectate lyase family proteinO.I.H.G.S.X.
0.7589.5Contig11955_atAt3g53190--4e-1At3g15630unknown proteinO.I.H.G.S.X.
0.6784.7Contig25763_atAt3g53190--3e-1At3g55280RPL23AB (RIBOSOMAL PROTEIN L23AB)O.I.H.G.S.X.
0.5369.7Contig657_s_atAt3g53190--1e-49At1g09200histone H3O.I.H.G.S.X.
0.4356.4Contig10319_atAt3g53190--2e-3At3g29170unknown proteinO.I.H.G.S.X.
0.3545.1Contig22781_atAt3g53190--1e+1At5g53895unknown proteinO.I.H.G.S.X.
0.2528.9Contig10816_atAt3g53190--2e+0At3g09160RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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