Co-expression analysis

Gene ID	Ptp.4629.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g12360: KEU (keule) (HF=9e-15)
Module size	6 genes
NF	0.32
%ile	56.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.95	Ptp.4629.1.S1_s_at	CV269449	hypothetical protein	-	9e-15	At1g12360	KEU (keule)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.3992.1.S1_at	DN498687	hypothetical protein	-	5e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.4333.1.S1_s_at	BU815840	hypothetical protein	-	1e-16	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.201151.1.S1_at	pmrna2260	hypothetical protein	-	3e-11	At2g21120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.96	PtpAffx.39908.3.S1_a_at	CX176310	hypothetical protein	-	1e-71	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.8	94.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage