Co-expression analysis

Gene ID	Ptp.457.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g59360: UTR6 (UDP-GALACTOSE TRANSPORTER 6) (HF=8e-1)
Module size	7 genes
NF	0.34
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.91	Ptp.457.2.S1_at	CK089199	hypothetical protein	-	8e-1	At3g59360	UTR6 (UDP-GALACTOSE TRANSPORTER 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.89	PtpAffx.202991.1.S1_at	pmrna5919	hypothetical protein	-	6e-1	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	PtpAffx.223043.1.S1_at	pmrna40832	-	-	2e-4	At1g32970	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.90	PtpAffx.148742.1.S1_at	BU823272	hypothetical protein	-	3e-1	At1g11475	NRPB10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	PtpAffx.5285.1.A1_s_at	CV254744	hypothetical protein	-	1e+0	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.220669.1.S1_at	pmrna37079	hypothetical protein	-	4e+1	At5g51910	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.91	PtpAffx.218039.1.S1_at	pmrna33551	hypothetical protein	-	1e-8	At2g37680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.0	97.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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