Co-expression analysis

Gene ID Ptp.4562.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g65940: CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) (HF=1e-20)
Module size 6 genes
NF 0.73
%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.97Ptp.4562.1.S1_s_atCV261348hypothetical protein-1e-20At5g65940CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)O.I.H.G.S.X.
0.8096.00.97PtpAffx.93043.1.S1_atCX178086hypothetical protein-4e-4At1g29800phosphoinositide binding / zinc ion bindingO.I.H.G.S.X.
0.8096.00.97PtpAffx.23095.1.S1_atCX177404hypothetical protein-1e-3At3g02540RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)O.I.H.G.S.X.
0.7393.60.97PtpAffx.72383.1.S1_atBU888356--2e+0At4g24265unknown proteinO.I.H.G.S.X.
0.5683.90.97PtpAffx.95687.1.A1_atDN496546hypothetical protein-4e-4At2g25010unknown proteinO.I.H.G.S.X.
0.5582.20.97PtpAffx.163113.1.S1_s_atCX182719hypothetical protein-2e-4At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage