Co-expression analysis

Gene ID Ptp.4515.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g47770: FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) (HF=5e-79)
Module size 6 genes
NF 0.52
%ile 82.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94Ptp.4515.1.S1_s_atCV253179hypothetical protein-5e-79At5g47770FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)O.I.H.G.S.X.
0.8096.00.94PtpAffx.5423.1.S1_s_atCV229504hypothetical protein-3e-24At4g11820MVA1O.I.H.G.S.X.
0.6791.10.95Ptp.4515.1.S1_atCV253179hypothetical protein-5e-79At5g47770FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)O.I.H.G.S.X.
0.5380.50.94PtpAffx.153434.1.A1_s_atCV264552hypothetical protein-2e-37At5g47720acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putativeO.I.H.G.S.X.
0.3357.50.94PtpAffx.216799.1.S1_atpmrna31818hypothetical protein-2e+0At4g21902unknown proteinO.I.H.G.S.X.
0.2950.50.94PtpAffx.147936.1.S1_s_atBP924717hypothetical protein-1e-21At5g48230ACAT2 (ACETOACETYL-COA THIOLASE 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.198.7GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.898.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.694.5GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.494.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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