Co-expression analysis

Gene ID	Ptp.4499.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g55640: unknown protein (HF=3e-8)
Module size	11 genes
NF	0.48
%ile	78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.95	Ptp.4499.1.S1_at	CN519933	hypothetical protein	-	3e-8	At5g55640	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	Ptp.1502.1.S1_a_at	CV234701	hypothetical protein	-	2e-11	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.21710.1.S1_s_at	CV230014	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	PtpAffx.4277.1.S1_a_at	CV265521	-	-	1e-131	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.249.859.A1_at	CV276451	-	-	4e-43	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	PtpAffx.249.18.A1_x_at	BP931138	-	-	3e-77	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.97	PtpAffx.2152.1.S1_s_at	CV254452	hypothetical protein	-	5e-5	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.21710.1.S1_x_at	CV230014	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.5471.1.A1_a_at	CV252337	hypothetical protein	-	3e-15	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.98	Ptp.4306.1.S1_at	CV225469	hypothetical protein	-	5e-78	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	Ptp.2627.1.A1_s_at	CX177881	-	-	4e-1	At5g07230	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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