Co-expression analysis

Gene ID Ptp.4472.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At4g33740: unknown protein (HF=3e-6)
Module size 7 genes
NF 0.17
%ile 33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.94Ptp.4472.1.S1_s_atDN494369--3e-6At4g33740unknown proteinO.I.H.G.S.X.
0.3661.60.96PtpAffx.15790.1.S1_atBU894484SET domain protein-2e+0At2g45960PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B)O.I.H.G.S.X.
0.3357.50.96PtpAffx.83523.1.S1_atDN496561hypothetical protein-1e-13At5g05970NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1)O.I.H.G.S.X.
0.2543.60.95PtpAffx.121503.1.A1_s_atCV237648hypothetical protein-8e-30At1g26370RNA helicase, putativeO.I.H.G.S.X.
0.2340.50.96PtpAffx.50006.1.A1_atCX175175hypothetical protein /// f-box family protein-3e-2At1g55270kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2034.60.95PtpAffx.115220.1.S1_s_atCX175982hypothetical protein-2e-2At1g78520-O.I.H.G.S.X.
0.0812.90.95Ptp.7945.1.S1_atCV231943hypothetical protein-6e+0At5g47060senescence-associated protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.495.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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