Co-expression analysis

Gene ID	Ptp.4446.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g11170: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (HF=2e-118)
Module size	7 genes
NF	0.45
%ile	74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.97	Ptp.4446.1.A1_s_at	CV257969	hypothetical protein	-	2e-118	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	Ptp.2290.1.S1_x_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.98	Ptp.4240.2.A1_a_at	CA927596	hypothetical protein	-	2e-27	At3g18880	ribosomal protein S17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.97	Ptp.3068.1.S1_at	CV265985	hypothetical protein	-	6e-7	At3g09890	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	Ptp.2156.1.S1_s_at	CV237670	-	-	8e-21	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.97	PtpAffx.115389.1.S1_s_at	AJ779828	hypothetical protein	-	2e-45	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.97	Ptp.1851.1.S1_x_at	CV250325	hypothetical protein	-	8e-58	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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