Co-expression analysis

Gene ID	Ptp.4433.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g20140: SOUL heme-binding family protein (HF=2e-6)
Module size	6 genes
NF	0.27
%ile	48.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.92	Ptp.4433.1.S1_at	CA923846	-	-	2e-6	At5g20140	SOUL heme-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.93	PtpAffx.151493.1.S1_at	CX174792	hypothetical protein	-	3e-13	At3g23700	S1 RNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.54452.1.S1_s_at	CX174503	hypothetical protein	-	3e-8	At1g12800	S1 RNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.222169.1.S1_at	pmrna39414	hypothetical protein	-	1e-34	At1g78915	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.23940.3.S1_a_at	BI125225	-	-	3e-19	At2g37240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.92	PtpAffx.154852.2.S1_a_at	CN520957	hypothetical protein	-	7e-6	At4g00050	UNE10 (unfertilized embryo sac 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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