Co-expression analysis

Gene ID	Ptp.438.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g40550: unknown protein (HF=2e-18)
Module size	6 genes
NF	0.35
%ile	60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.96	Ptp.438.1.S1_at	CK317792	hypothetical protein	-	2e-18	At5g40550	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.96	PtpAffx.37010.1.A1_a_at	CV231839	hypothetical protein	-	4e-16	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.65137.1.S1_at	DN493780	-	-	5e-3	At3g15920	phox (PX) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	Ptp.2201.1.S1_at	DN492023	hypothetical protein	-	8e-6	At3g14160	oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	PtpAffx.13738.2.S1_a_at	CV278160	-	-	6e-13	At5g66930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.96	Ptp.4836.1.S1_at	CV264041	hypothetical protein	-	1e-19	At1g12470	Pep3/Vps18/deep orange family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	91.8	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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