Co-expression analysis

Gene ID Ptp.4360.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g11840: ATGLX1 (GLYOXALASE I HOMOLOG) (HF=4e-60)
Module size 6 genes
NF 0.24
%ile 44.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.94Ptp.4360.1.S1_s_atBU831376hypothetical protein-4e-60At1g11840ATGLX1 (GLYOXALASE I HOMOLOG)O.I.H.G.S.X.
0.6086.00.93Ptp.6774.1.A1_s_atCV266335--4e-17At1g11840ATGLX1 (GLYOXALASE I HOMOLOG)O.I.H.G.S.X.
0.4471.90.94Ptp.2395.1.S1_atCK092689hypothetical protein-4e-18At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)O.I.H.G.S.X.
0.2950.50.94PtpAffx.12016.2.S1_atCX174164hypothetical protein-1e-19At1g243603-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseO.I.H.G.S.X.
0.1321.60.94PtpAffx.144428.1.S1_s_atBU834002hypothetical protein-2e-115At5g35360CAC2O.I.H.G.S.X.
0.0812.90.94Ptp.5902.1.S1_s_atAI162290hypothetical protein-5e+0At3g48180unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.096.6GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.996.5GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.395.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage