Co-expression analysis

Gene ID	Ptp.4333.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g14835: zinc finger (C3HC4-type RING finger) family protein (HF=1e-16)
Module size	8 genes
NF	0.28
%ile	50.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.96	Ptp.4333.1.S1_s_at	BU815840	hypothetical protein	-	1e-16	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.96	PtpAffx.39908.3.S1_a_at	CX176310	hypothetical protein	-	1e-71	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	PtpAffx.138176.1.S1_s_at	BU883966	hypothetical protein	-	7e-5	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	Ptp.1045.1.A1_at	CF232206	-	-	8e-5	At1g14570	UBX domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.97	PtpAffx.79842.1.S1_at	BU884342	hypothetical protein	-	6e-9	At3g43700	ATBPM6 (BTB-POZ and MATH domain 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.96	Ptp.7424.1.S1_at	BU861469	hypothetical protein	-	7e-52	At1g12840	DET3 (DE-ETIOLATED 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.97	PtpAffx.21417.1.S1_at	CN520322	hypothetical protein	-	3e-135	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.96	PtpAffx.39134.2.S1_s_at	BU818720	hypothetical protein	-	8e-23	At5g10270	CDKC	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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